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Page 1
Canonical titration simulations.
Bakhshandeh A, Levin Y. Bakhshandeh A, et al. Phys Chem Chem Phys. 2023 Dec 13;25(48):32800-32806. doi: 10.1039/d3cp04607a. Phys Chem Chem Phys. 2023. PMID: 38032540
We present a Monte Carlo approach for performing titration simulations in the canonical ensemble. The standard constant pH (cpH) simulation methods are intrinsically grand canonical, allowing us to study the protonation state of molecules only as a functio …
We present a Monte Carlo approach for performing titration simulations in the canonical ensemble. The standard constant pH (cp …
Ownership and convention.
Nichols S, Thrasher J. Nichols S, et al. Cognition. 2023 Aug;237:105454. doi: 10.1016/j.cognition.2023.105454. Epub 2023 Apr 9. Cognition. 2023. PMID: 37040670
Study 2 examines intuitions about authority dependence of ownership violations as compared to canonical conventional and harm-based moral violations. We find that ownership violations are treated as more authority dependent than harm-based moral violations. ...Finally, in …
Study 2 examines intuitions about authority dependence of ownership violations as compared to canonical conventional and harm-based m …
The muon Smasher's guide.
Al Ali H, Arkani-Hamed N, Banta I, Benevedes S, Buttazzo D, Cai T, Cheng J, Cohen T, Craig N, Ekhterachian M, Fan J, Forslund M, Garcia IG, Homiller S, Koren S, Koszegi G, Liu Z, Lu Q, Lyu KF, Mariotti A, McCune A, Meade P, Ojalvo I, Oktem U, Redigolo D, Reece M, Sala F, Sundrum R, Sutherland D, Tesi A, Trott T, Tully C, Wang LT, Wang M. Al Ali H, et al. Rep Prog Phys. 2022 Jul 5;85(8). doi: 10.1088/1361-6633/ac6678. Rep Prog Phys. 2022. PMID: 35413691 Review.
An extensive appendix provides cross section predictions as a function of the center-of-mass energy for many canonical simplified models....
An extensive appendix provides cross section predictions as a function of the center-of-mass energy for many canonical simplif …
Negative regulatory NLRs mitigate inflammation via NF-κB pathway signaling in inflammatory bowel disease.
Morrison HA, Trusiano B, Rowe AJ, Allen IC. Morrison HA, et al. Biomed J. 2023 Oct;46(5):100616. doi: 10.1016/j.bj.2023.100616. Epub 2023 Jun 14. Biomed J. 2023. PMID: 37321320 Free PMC article. Review.
A subset of Nucleotide-binding and leucine-rich repeat-containing receptors (NLRs) function to mitigate overzealous pro-inflammatory signaling produced by NF-kappaB activation. ...Mouse models deficient in these NLRs also have increased susceptibility to colitis and coliti …
A subset of Nucleotide-binding and leucine-rich repeat-containing receptors (NLRs) function to mitigate overzealous pro-inflammatory …
Dissecting neuron-specific functions of circadian genes using modified cell-specific CRISPR approaches.
Richhariya S, Shin D, Le JQ, Rosbash M. Richhariya S, et al. Proc Natl Acad Sci U S A. 2023 Jul 18;120(29):e2303779120. doi: 10.1073/pnas.2303779120. Epub 2023 Jul 10. Proc Natl Acad Sci U S A. 2023. PMID: 37428902 Free PMC article.
The CRISPR-based strategy not only reproduced their known phenotypes but also assigned cry function for different light-mediated phenotypes to discrete, different subsets of clock neurons. ...The results were not identical, but both approaches successfully showed that the …
The CRISPR-based strategy not only reproduced their known phenotypes but also assigned cry function for different light-mediated phen …
DNA mismatch repair-dependent DNA damage responses and cancer.
Ijsselsteijn R, Jansen JG, de Wind N. Ijsselsteijn R, et al. DNA Repair (Amst). 2020 Sep;93:102923. doi: 10.1016/j.dnarep.2020.102923. DNA Repair (Amst). 2020. PMID: 33087264 Free article. Review.
Canonical DNA mismatch repair (MMR) excises base-base mismatches to increase the fidelity of DNA replication. ...Sam not only made seminal contributions to understanding base excision repair, particularly with respect to structure-function relationships in DNA polym …
Canonical DNA mismatch repair (MMR) excises base-base mismatches to increase the fidelity of DNA replication. ...Sam not only made se …
Volanesorsen for treatment of familial chylomicronemia syndrome.
Lazarte J, Hegele RA. Lazarte J, et al. Expert Rev Cardiovasc Ther. 2021 Aug;19(8):685-693. doi: 10.1080/14779072.2021.1955348. Epub 2021 Jul 27. Expert Rev Cardiovasc Ther. 2021. PMID: 34261380 Review.
The major risk to health is acute pancreatitis. FCS is defined by biallelic loss-of-function mutations in one of five canonical genes that encode proteins critical to lipolysis of large triglyceride-rich lipoprotein particles. Unlike the vast majority of patients wi …
The major risk to health is acute pancreatitis. FCS is defined by biallelic loss-of-function mutations in one of five canonical …
Far-red fluorescent probes for canonical and non-canonical nucleic acid structures: current progress and future implications.
Suseela YV , Narayanaswamy N , Pratihar S , Govindaraju T . Suseela YV , et al. Chem Soc Rev. 2018 Feb 5;47(3):1098-1131. doi: 10.1039/c7cs00774d. Chem Soc Rev. 2018. PMID: 29264610 Review.
The structural diversity and functional relevance of nucleic acids (NAs), mainly deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), are indispensable for almost all living organisms, with minute aberrations in their structure and function becoming causative factors in …
The structural diversity and functional relevance of nucleic acids (NAs), mainly deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), are …
Role of soluble adenylyl cyclase in the heart.
Chen J, Levin LR, Buck J. Chen J, et al. Am J Physiol Heart Circ Physiol. 2012 Feb 1;302(3):H538-43. doi: 10.1152/ajpheart.00701.2011. Epub 2011 Nov 4. Am J Physiol Heart Circ Physiol. 2012. PMID: 22058150 Free PMC article. Review.
These hormones can act via cAMP by binding to a G protein-coupled receptor on the plasma membrane with subsequent activation of a heterotrimeric G protein and its downstream effector, transmembrane adenylyl cyclase. This has long been the canonical standard for cAMP …
These hormones can act via cAMP by binding to a G protein-coupled receptor on the plasma membrane with subsequent activation of a heterotrim …
On distinguishing between canonical tRNA genes and tRNA gene fragments in prokaryotes.
van der Gulik PTS, Egas M, Kraaijeveld K, Dombrowski N, Groot AT, Spang A, Hoff WD, Gallie J. van der Gulik PTS, et al. RNA Biol. 2023 Jan;20(1):48-58. doi: 10.1080/15476286.2023.2172370. RNA Biol. 2023. PMID: 36727270 Free PMC article.
Here, we highlight a pervasive error in prokaryotic tRNA gene sets on GtRNAdb: the mis-categorization of partial, non-canonical tRNA genes as standard, canonical tRNA genes. Firstly, we demonstrate the issue using the tRNA gene sets of 20 organisms from the a …
Here, we highlight a pervasive error in prokaryotic tRNA gene sets on GtRNAdb: the mis-categorization of partial, non-canonical tRNA …
266 results